Bra-MIR159d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AAAAAAGAAGATTGAAAGTA          A        C      -TT   ------       AGA      G     C    G TC     -    CT       ATAGAGAG
                      GAGCTCCTTT AGTTCAAA GAGAGT   AGT      AGGGTAA   AAAGCT CTAAG TATG A  CCATA AGCC  AATCCTT        
                      |||||||||| |||||||| ||||||   |||      |||||||   |||||| ||||| |||| |  ||||| ||||  |||||||         
                      CTCGAGGGAA TTAGGTTT TTCTCA   TCG      TCCCGTT   TTTCGA GATTC ATAC T  GGTAT TTGG  TTAGGAA        
TTTACTTCTCTTTCTTCAACAT          G        C      TTT   TTAATT       CAA      G     T    G TC     A    -T       AAAAAAGA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-63 Aly-MIR159a Aly-scaffold_2: 15958622-15958842 - Brassica rapa Bra-MIR159d Bra-A07: 24993751-24993975 +
SY-439 Ath-MIR159a Ath-Chr1: 27713214-27713433 - Brassica rapa Bra-MIR159d Bra-A07: 24993751-24993975 +
SY-728 Bol-MIR159a Bol-C02: 16850346-16850562 - Brassica rapa Bra-MIR159d Bra-A07: 24993751-24993975 +
SY-732 Bol-MIR159b Bol-C06: 33256920-33257135 + Brassica rapa Bra-MIR159d Bra-A07: 24993751-24993975 +
SY-738 Bol-MIR159c Bol-C06: 3552444-3552661 + Brassica rapa Bra-MIR159d Bra-A07: 24993751-24993975 +
SY-923 Bra-MIR159a Bra-A07: 19765886-19766103 + Brassica rapa Bra-MIR159d Bra-A07: 24993751-24993975 +
SY-926 Bra-MIR159b Bra-A02: 12875495-12875712 - Brassica rapa Bra-MIR159d Bra-A07: 24993751-24993975 +
SY-930 Bra-MIR159d Bra-A07: 24993751-24993975 + Capsella rubella Cru-MIR159b Cru-scaffold_2: 11281838-11282056 -
SY-931 Bra-MIR159d Bra-A07: 24993751-24993975 + Eutrema salsugineum Esa-MIR159b Esa-scaffold_9: 3074879-3075095 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Brara.C01651.1 1.0 NA NA
Brara.B01349.1 1.5 1 NA
Brara.A01703.1 2.0 NA NA
Brara.D01963.1 2.0 NA NA
Brara.G01884.1 2.0 1 NA
Brara.I04172.1 2.0 1 NA
Brara.J00957.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference