Cru-MIR156b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   AAT   A  TA     A         -                    GGT   TT     CTTTTTTCAATC
  A   TAA GG  AGAGG GGTGACAGA AGAGAGTGAGCACACATGGT   TTC  GCATG            
  |   ||| ||  ||||| ||||||||| ||||||||||||||||||||   |||  |||||            A
  T   ATT TC  TCTTC CCACTGTCT TCTCTCATTCGTGTGTATCG   AAG  CGTAC            
TC CTC   C  TC     C         C                    ---   TT     TACTGCTTTGGG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-25 Aly-MIR156e Aly-scaffold_6: 4871354-4871493 + Capsella rubella Cru-MIR156b Cru-scaffold_6: 3853810-3853954 +
SY-414 Ath-MIR156e Ath-Chr5: 3867193-3867330 + Capsella rubella Cru-MIR156b Cru-scaffold_6: 3853810-3853954 +
SY-879 Bra-MIR156a Bra-A02: 2009598-2009739 + Capsella rubella Cru-MIR156b Cru-scaffold_6: 3853810-3853954 +
SY-900 Bra-MIR156l Bra-A03: 2333604-2333716 + Capsella rubella Cru-MIR156b Cru-scaffold_6: 3853810-3853954 +
SY-908 Bra-MIR156s Bra-A10: 16564108-16564250 - Capsella rubella Cru-MIR156b Cru-scaffold_6: 3853810-3853954 +
SY-1200 Cru-MIR156b Cru-scaffold_6: 3853810-3853954 + Eutrema salsugineum Esa-MIR156h Esa-scaffold_2: 3944906-3945035 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0004s1548.1 0.5 1 NA
Carub.0001s2589.1 1.0 1 NA
Carub.0001s2590.1 1.0 NA NA
Carub.0004s2454.1 1.0 1 NA
Carub.0005s2476.1 1.0 1 NA
Carub.0008s0542.1 1.0 1 NA
Carub.0008s1066.1 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference