Cru-MIR157c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   ---    TT    TATA   T         -A             T  -      A   TTC   TCA
 GA   GGCA  GATA    GTG TGACAGAAG  TAGAGAGCACAGA GA TGAGAT CAA   AGA   
 ||   ||||  ||||    ||| |||||||||  ||||||||||||| || |||||| |||   |||    
 CT   TCGT  TTAT    TAC ACTGTCTTC  ATCTCTCGTGTTT CT ATTCTA GTT   TCT   
C  ATT    --    TTTC   T         CG             C  C      C   ---   TTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-38 Aly-MIR157a Aly-scaffold_2: 11818138-11818270 - Capsella rubella Cru-MIR157c Cru-scaffold_2: 8184653-8184783 -
SY-423 Ath-MIR157a Ath-Chr1: 24913184-24913316 - Capsella rubella Cru-MIR157c Cru-scaffold_2: 8184653-8184783 -
SY-919 Bra-MIR157c Bra-A02: 9519858-9519990 + Capsella rubella Cru-MIR157c Cru-scaffold_2: 8184653-8184783 -
SY-921 Bra-MIR157d Bra-A07: 21853207-21853339 + Capsella rubella Cru-MIR157c Cru-scaffold_2: 8184653-8184783 -
SY-1207 Cru-MIR157c Cru-scaffold_2: 8184653-8184783 - Eutrema salsugineum Esa-MIR157d Esa-scaffold_9: 9304808-9304939 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0001s2589.1 1.5 1 NA
Carub.0001s2590.1 1.5 NA NA
Carub.0002s1577.1 1.5 1 NA
Carub.0004s2454.1 1.5 1 NA
Carub.0005s2476.1 1.5 1 NA
Carub.0008s0542.1 1.5 1 NA
Carub.0008s1066.1 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference