PmiREN: Plant microRNA Encyclopedia

Cru-MIR160a

Basic info.

miRNA locus ID
Cru-MIR160a

miRNA locus accession
PmiREN002748

Organism
Capsella rubella

Genomic location
Cru-scaffold_4 11428474 11428594 +

Comments
A member of family MIR160

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GTAGATG   -          --------   C       C         TA   TT  CC      G
       TAT TATATATGTA        TGC TGGCTCC TGTATGCCA  CGC  AG  CATCGA 
       ||| ||||||||||        ||| ||||||| |||||||||  |||  ||  |||||| T
       ATA ATATATACAT        ACG ACCGAGG GTATGCGGT  GTG  TC  GTAGCT 
          T          ACTCCTAT   T       A         AG   CC  CA      A

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-451	Ath-MIR160a	Ath-Chr2: 16340262-16340382 +	Capsella rubella	Cru-MIR160a	Cru-scaffold_4: 11428474-11428594 +
SY-935	Bra-MIR160c	Bra-A03: 9900202-9900322 +	Capsella rubella	Cru-MIR160a	Cru-scaffold_4: 11428474-11428594 +
SY-1211	Cru-MIR160a	Cru-scaffold_4: 11428474-11428594 +	Eutrema salsugineum	Esa-MIR160a	Esa-scaffold_10: 10128504-10128624 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Carub.0002s2474.1	0.5	NA	NA
Carub.0004s0926.1	1.0	NA	NA
Carub.0007s1052.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR160a

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