PmiREN: Plant microRNA Encyclopedia

Cru-MIR160c

Basic info.

miRNA locus ID
Cru-MIR160c

miRNA locus accession
PmiREN002750

Organism
Capsella rubella

Genomic location
Cru-scaffold_8 399218 399340 +

Comments
A member of family MIR160

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TATATATTAGTTTGTC       C       C          GA    ATA        GGT
                  GTTATGC TGGCTCC TGTATGCCAC  GTGG   CCGATTTT   
                  ||||||| ||||||| ||||||||||  ||||   ||||||||    
                  CAGTACG ACCGAGG ACATGCGGTG  CGTC   GGCTAAAA   
TCAATAGTATACGAAGAC       A       A          GC    ---        ATT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-78	Aly-MIR160c	Aly-scaffold_8: 677270-677391 +	Capsella rubella	Cru-MIR160c	Cru-scaffold_8: 399218-399340 +
SY-461	Ath-MIR160c	Ath-Chr5: 19009076-19009198 -	Capsella rubella	Cru-MIR160c	Cru-scaffold_8: 399218-399340 +
SY-936	Bra-MIR160e	Bra-A09: 14418668-14418789 -	Capsella rubella	Cru-MIR160c	Cru-scaffold_8: 399218-399340 +
SY-1213	Cru-MIR160c	Cru-scaffold_8: 399218-399340 +	Eutrema salsugineum	Esa-MIR160c	Esa-scaffold_20: 2068305-2068426 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Carub.0002s2474.1	0.5	NA	NA
Carub.0004s0926.1	1.0	NA	NA
Carub.0007s1052.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR160c

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