PmiREN: Plant microRNA Encyclopedia

Cru-MIR166g

Basic info.

miRNA locus ID
Cru-MIR166g

miRNA locus accession
PmiREN002763

Organism
Capsella rubella

Genomic location
Cru-scaffold_8 11863928 11864056 +

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CTAC    --TTA     T  A      TT      C      -     A     AATTCTATAAC
    CGAT     GGGTT AG GGAATG  GTTTGG TCGAGG TCATC AGAGT           
    ||||     ||||| || ||||||  |||||| |||||| ||||| |||||            
    GCTA     TCCAA TC CCTTAC  CGGACC GGCTCT AGTAG TCTCG           
TTAC    TTTTA     C  C      TT      A      T     A     AAACCTCAAAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-131	Aly-MIR166c	Aly-scaffold_6: 3626977-3627123 +	Capsella rubella	Cru-MIR166g	Cru-scaffold_8: 11863928-11864056 +
SY-143	Aly-MIR166g	Aly-scaffold_8: 21095447-21095574 +	Capsella rubella	Cru-MIR166g	Cru-scaffold_8: 11863928-11864056 +
SY-508	Ath-MIR166c	Ath-Chr5: 2838632-2838777 +	Capsella rubella	Cru-MIR166g	Cru-scaffold_8: 11863928-11864056 +
SY-520	Ath-MIR166g	Ath-Chr5: 25504795-25504922 +	Capsella rubella	Cru-MIR166g	Cru-scaffold_8: 11863928-11864056 +
SY-1219	Cru-MIR166c	Cru-scaffold_6: 2828675-2828826 +	Capsella rubella	Cru-MIR166g	Cru-scaffold_8: 11863928-11864056 +
SY-1222	Cru-MIR166g	Cru-scaffold_8: 11863928-11864056 +	Eutrema salsugineum	Esa-MIR166e	Esa-scaffold_2: 2890642-2890782 +
SY-1223	Cru-MIR166g	Cru-scaffold_8: 11863928-11864056 +	Eutrema salsugineum	Esa-MIR166h	Esa-scaffold_6: 1539129-1539256 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Carub.0005s2865.1	0.0	0	NA
Carub.0001s4109.1	0.5	NA	NA
Carub.0001s2871.1	1.0	NA	NA
Carub.0004s1640.1	1.0	NA	NA
Carub.0007s0761.1	1.0	NA	NA
Carub.0008s2137.1	1.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR166g

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