PmiREN: Plant microRNA Encyclopedia

Cru-MIR167c

Basic info.

miRNA locus ID
Cru-MIR167c

miRNA locus accession
PmiREN002766

Organism
Capsella rubella

Genomic location
Cru-scaffold_3 1312452 1312646 -

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TAC     AC    ----     -TT                  T             -     ----       --T   -TAT             ----    T
   CATGT  CAGT    AGCAG   AAGCTGCCAGCATGATCT GTCTTTCTCTCTT AAGTT    TCATATA   ATA    ATATATGTATAAT    TAAG 
   |||||  ||||    |||||   |||||||||||||||||| ||||||||||||| |||||    |||||||   |||    |||||||||||||    |||| A
   GTACG  GTTA    TCGTC   TTCGATGGTCGTACTGGA CAGAGAGAGAGAG TTCGA    AGTATAT   TGT    TATATATATATTA    ATTC 
        AT    GTAA     CAC                  T             A     TCCT       TCT   TCTT             TAGG    A

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-164	Aly-MIR167c	Aly-scaffold_3: 1657178-1657357 -	Capsella rubella	Cru-MIR167c	Cru-scaffold_3: 1312452-1312646 -
SY-534	Ath-MIR167c	Ath-Chr3: 1306611-1306790 -	Capsella rubella	Cru-MIR167c	Cru-scaffold_3: 1312452-1312646 -
SY-1193	Bra-MIRN355	Bra-A05: 27285139-27285303 -	Capsella rubella	Cru-MIR167c	Cru-scaffold_3: 1312452-1312646 -
SY-1226	Cru-MIR167c	Cru-scaffold_3: 1312452-1312646 -	Eutrema salsugineum	Esa-MIR167a	Esa-scaffold_13: 8096158-8096343 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Carub.0001s2855.1	2.0	NA	NA
Carub.0007s3229.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR167c

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