Cru-MIR172b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CAC    G   TTT    C                   ----A    T TGTTTGATGAACGGTGG
     GGTC TTG   GCTG TGTGGCATCATCAAGATTC     CATC C                 
     |||| |||   |||| |||||||||||||||||||     |||| |                 T
     TCAG AAC   CGGC ACGTCGTAGTAGTTCTAAG     AAGT G                 
TATTA    G   TAC    T                   AGTAA    - TCTCTCCTCTCACTTAG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-593 Ath-MIR172a Ath-Chr2: 11942898-11943031 - Capsella rubella Cru-MIR172b Cru-scaffold_4: 6361908-6362037 -
SY-1076 Bra-MIR172i Bra-A03: 12117350-12117484 + Capsella rubella Cru-MIR172b Cru-scaffold_4: 6361908-6362037 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0004s0952.1 0.5 NA NA
Carub.0007s0310.1 0.5 0 NA
Carub.0008s2084.1 0.5 NA NA
Carub.0008s2733.1 0.5 0 NA
Carub.0005s2161.1 1.5 NA NA
Carub.0004s2130.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference