Cru-MIR172c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 TGC       -GT     A     A    T         AG         TCTTT       C    T TCC
    AGTCGTT   TTGCT TTGCA CATC TCAAGATTC  AAATCAGAT     GTATGGG TCTC C   
    |||||||   ||||| ||||| |||| |||||||||  |||||||||     ||||||| |||| |    
    TCAGTAA   AACGG GACGT GTAG AGTTCTAAG  TTTGGTTTA     TATATCC AGAG G   
TTAT       ATT     C     C    T         AG         ----T       A    - TTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-248 Aly-MIR172d Aly-scaffold_5: 17548823-17548951 + Capsella rubella Cru-MIR172c Cru-scaffold_5: 10805832-10805970 +
SY-605 Ath-MIR172d Ath-Chr3: 20587901-20588031 + Capsella rubella Cru-MIR172c Cru-scaffold_5: 10805832-10805970 +
SY-1063 Bra-MIR172c Bra-A09: 34969393-34969523 + Capsella rubella Cru-MIR172c Cru-scaffold_5: 10805832-10805970 +
SY-1071 Bra-MIR172f Bra-A04: 2808596-2808726 - Capsella rubella Cru-MIR172c Cru-scaffold_5: 10805832-10805970 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Carub.0004s0952.1 0.5 NA NA
Carub.0007s0310.1 0.5 0 NA
Carub.0008s2084.1 0.5 NA NA
Carub.0008s2733.1 0.5 0 NA
Carub.0005s2161.1 1.5 NA NA
Carub.0004s2130.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference