PmiREN: Plant microRNA Encyclopedia

Cru-MIR394b

Basic info.

miRNA locus ID
Cru-MIR394b

miRNA locus accession
PmiREN002793

Organism
Capsella rubella

Genomic location
Cru-scaffold_2 12220763 12220903 +

Comments
A member of family MIR394

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     T    T     GA   -      TTC               --T        TATGTTTGTGTAGTA
 AGAG CTCT ACAGA  TCT TTGGCA   TGTCCACCTCCTCTC   CTATATAA               
 |||| |||| |||||  ||| ||||||   |||||||||||||||   ||||||||               A
 TCTT GGGA TGTCT  AGA AACCGT   ACGGGTGGAGGAGGG   TTTGTGTT               
T    T    T     AG   T      CAT               TGT        CCTTCTATGAATGCG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-305	Aly-MIR394a	Aly-scaffold_1: 8699220-8699343 +	Capsella rubella	Cru-MIR394b	Cru-scaffold_2: 12220763-12220903 +
SY-1249	Cru-MIR394a	Cru-scaffold_1: 7092612-7092742 +	Capsella rubella	Cru-MIR394b	Cru-scaffold_2: 12220763-12220903 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Carub.0001s2587.1	1.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR394b

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