Cru-MIR399d

Basic info.

• miRNA locus ID
• Cru-MIR399d

• miRNA locus accession
• PmiREN002814

• Organism
• Capsella rubella

• Genomic location
• Cru-scaffold_4  9363165  9363304  +

• Comments
• A member of family MIR399

• Confidence level
• 

Secondary strurture and sequence

  TAA       AT C     A     A    A  C        --TA  T     -  TCC    CT    T
     GGTGTAA  G ATTAC GGGCA GATC CC TTGGCAGA    TC ATTAC AC   CATT  TGCA 
     |||||||  | ||||| ||||| |||| || ||||||||    || ||||| ||   ||||  |||| A
     CCACGTT  C TAATG CCCGT TTAG GG AACCGTCT    AG TAGTG TG   GTAA  ACGT 
TGCAA       CT T     G     -    A  A        CTCG  -     G  TCT    AT    A

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference