Bra-MIR399g

Basic info.

• miRNA locus ID
• Bra-MIR399g

• miRNA locus accession
• PmiREN002542

• Organism
• Brassica rapa

• Genomic location
• Bra-A08  18094144  18094280  -

• Comments
• A member of family MIR399

• Confidence level
• 

Secondary strurture and sequence

  AAA    AAAAT C     A     A       A        A   -      TT   CTT     CTC
     GGTG     G ATTAC GGGCA GATCTCT TTGGCAGG AAC CATTAC  GAC   TGCAT   
     ||||     | ||||| ||||| ||||||| |||||||| ||| ||||||  |||   |||||    
     TCGC     C TAATG CCCGT TTAGAGG AACCGTCT TTG GTGATG  TTG   ACGTA   
AATAA    GTCTT T     G     -       A        C   A      TT   -TT     TTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference