Cru-MIR399e

Basic info.

• miRNA locus ID
• Cru-MIR399e

• miRNA locus accession
• PmiREN002815

• Organism
• Capsella rubella

• Genomic location
• Cru-scaffold_8  11253798  11253945  +

• Comments
• A member of family MIR399

• Confidence level
• 

Secondary strurture and sequence

 CAG         -A   A        T      A        C   TCT      TT   TTTGTTTTTTTTCT
    TAAGCGGAG  AGT ATAGGGCA CTTTCT TTGGCAGG GGC   GTCGAT  GCC              
    |||||||||  ||| |||||||| |||||| |||||||| |||   ||||||  |||              T
    ATTCGCCTT  TCA TGTCCCGT GAGAGG AACCGTTC CTG   CGGTTG  CGG              
ACAA         CG   C        T      A        A   TAT      -T   TTTTCTTGTTTGCG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference