PmiREN: Plant microRNA Encyclopedia

Cru-MIR403

Basic info.

miRNA locus ID
Cru-MIR403

miRNA locus accession
PmiREN002816

Organism
Capsella rubella

Genomic location
Cru-scaffold_4 14757166 14757292 +

Comments
A member of family MIR403

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  ATTG      T  T     AT    T                   AA   -TTTTTACG   GA
      GAAGAG CG ATTAC  GTTT GTGCGTGAATCTAATTCGA  GGC         GAG  
      |||||| || |||||  |||| |||||||||||||||||||  |||         |||   
      CTTTTC GT TAATG  CAAA CACGCACTTAGATTAGGTT  TCG         TTC  
TTTGAG      C  C     CT    -                   -G   TTTACTATA   AG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-362	Aly-MIR403a	Aly-scaffold_4: 22991764-22991898 +	Capsella rubella	Cru-MIR403	Cru-scaffold_4: 14757166-14757292 +
SY-705	Ath-MIR403	Ath-Chr2: 19415056-19415195 +	Capsella rubella	Cru-MIR403	Cru-scaffold_4: 14757166-14757292 +
SY-1185	Bra-MIR403	Bra-A05: 306441-306559 -	Capsella rubella	Cru-MIR403	Cru-scaffold_4: 14757166-14757292 +
SY-1261	Cru-MIR403	Cru-scaffold_4: 14757166-14757292 +	Eutrema salsugineum	Esa-MIR403	Esa-scaffold_22: 1579827-1579948 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Carub.0001s2971.1	0.0	NA	NA
Carub.0001s2972.1	1.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR403

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