Esa-MIR156d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
A     ---AAA   AAA   A         -   -         A   ---      TT    -TAT T   TA
 AAAGA      CAC   GAA CTGACAGAA GAG AGTGAGCAC CAA   AGGCAA  TGCA    G TTG  
 |||||      |||   ||| ||||||||| ||| ||||||||| |||   ||||||  ||||    | |||   
 TTTCT      GTG   CTT GACTGTCTT CTC TCACTCGTG GTT   TTCGTT  ACGT    C AGC  
G     ATAGTC   -GC   A         T   G         C   CTC      -T    CACT T   CT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-8 Aly-MIR156a Aly-scaffold_4: 3693798-3693921 - Eutrema salsugineum Esa-MIR156d Esa-scaffold_15: 4948287-4948425 -
SY-394 Ath-MIR156a Ath-Chr2: 10676450-10676573 - Eutrema salsugineum Esa-MIR156d Esa-scaffold_15: 4948287-4948425 -
SY-406 Ath-MIR156c Ath-Chr4: 15415406-15415530 - Eutrema salsugineum Esa-MIR156d Esa-scaffold_15: 4948287-4948425 -
SY-887 Bra-MIR156f Bra-A09: 38656170-38656292 + Eutrema salsugineum Esa-MIR156d Esa-scaffold_15: 4948287-4948425 -
SY-905 Bra-MIR156o Bra-A04: 13621955-13622077 - Eutrema salsugineum Esa-MIR156d Esa-scaffold_15: 4948287-4948425 -
SY-1198 Cru-MIR156a Cru-scaffold_4: 2142098-2142223 - Eutrema salsugineum Esa-MIR156d Esa-scaffold_15: 4948287-4948425 -
SY-1201 Cru-MIR156d Cru-scaffold_7: 3310268-3310392 + Eutrema salsugineum Esa-MIR156d Esa-scaffold_15: 4948287-4948425 -
SY-1265 Esa-MIR156f Esa-scaffold_1: 3452779-3452903 + Eutrema salsugineum Esa-MIR156d Esa-scaffold_15: 4948287-4948425 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Thhalv10003215m 1.0 1 NA
Thhalv10006058m 1.0 1 NA
Thhalv10007832m 1.0 1 NA
Thhalv10007882m 1.0 1 NA
Thhalv10011728m 1.0 1 NA
Thhalv10013892m 1.0 1 NA
Thhalv10016816m 1.0 1 NA
Thhalv10017406m 1.0 1 NA
Thhalv10018638m 1.0 1 NA
Thhalv10022738m 1.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference