PmiREN: Plant microRNA Encyclopedia

Esa-MIR156f

Basic info.

miRNA locus ID
Esa-MIR156f

miRNA locus accession
PmiREN005588

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_1 3452779 3452903 +

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   TAGAGAAAAC  ATC   A        -    -         A   ---     CTT     GT
             GC   GAA CTGACAGA AGAG AGTGAGCAC CAA   AGGCA   TGCAT  
             ||   ||| |||||||| |||| ||||||||| |||   |||||   |||||  T
             CG   CTT GACTGTCT TCTC TCACTCGTG GTT   TTCGT   ACGTA  
TATTTCTGAGCCA  -GC   A        A    G         C   CTC     -TT     GC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-9	Aly-MIR156a	Aly-scaffold_4: 3693798-3693921 -	Eutrema salsugineum	Esa-MIR156f	Esa-scaffold_1: 3452779-3452903 +
SY-395	Ath-MIR156a	Ath-Chr2: 10676450-10676573 -	Eutrema salsugineum	Esa-MIR156f	Esa-scaffold_1: 3452779-3452903 +
SY-407	Ath-MIR156c	Ath-Chr4: 15415406-15415530 -	Eutrema salsugineum	Esa-MIR156f	Esa-scaffold_1: 3452779-3452903 +
SY-882	Bra-MIR156c	Bra-Scaffold16715: 106195-106319 +	Eutrema salsugineum	Esa-MIR156f	Esa-scaffold_1: 3452779-3452903 +
SY-888	Bra-MIR156f	Bra-A09: 38656170-38656292 +	Eutrema salsugineum	Esa-MIR156f	Esa-scaffold_1: 3452779-3452903 +
SY-895	Bra-MIR156j	Bra-A01: 2925936-2926060 +	Eutrema salsugineum	Esa-MIR156f	Esa-scaffold_1: 3452779-3452903 +
SY-906	Bra-MIR156o	Bra-A04: 13621955-13622077 -	Eutrema salsugineum	Esa-MIR156f	Esa-scaffold_1: 3452779-3452903 +
SY-1199	Cru-MIR156a	Cru-scaffold_4: 2142098-2142223 -	Eutrema salsugineum	Esa-MIR156f	Esa-scaffold_1: 3452779-3452903 +
SY-1202	Cru-MIR156d	Cru-scaffold_7: 3310268-3310392 +	Eutrema salsugineum	Esa-MIR156f	Esa-scaffold_1: 3452779-3452903 +
SY-1265	Esa-MIR156f	Esa-scaffold_1: 3452779-3452903 +	Eutrema salsugineum	Esa-MIR156d	Esa-scaffold_15: 4948287-4948425 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10003215m	1.0	1	NA
Thhalv10006058m	1.0	1	NA
Thhalv10007832m	1.0	1	NA
Thhalv10007882m	1.0	1	NA
Thhalv10011728m	1.0	1	NA
Thhalv10013892m	1.0	1	NA
Thhalv10016816m	1.0	1	NA
Thhalv10017406m	1.0	1	NA
Thhalv10018638m	1.0	1	NA
Thhalv10022738m	1.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR156f

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