Esa-MIR156g

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TGTTGATGGGGGAAA      --        -            A      G  AG     TAAAAA
                 AGAAGT  TGACAGAA GAGAGTGAGCAC CAAAGG GA  TTGTA      
                 ||||||  |||||||| |||||||||||| |||||| ||  |||||      T
                 TCTTCA  ACTGTCTT CTCTCACTCGTG GTTTTC TT  GGCAT      
TATTTCTAAGTACTTCC      AT        T            C      G  --     TTTCTC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-20 Aly-MIR156d Aly-scaffold_6: 4353129-4353256 - Eutrema salsugineum Esa-MIR156g Esa-scaffold_2: 3514669-3514800 -
SY-410 Ath-MIR156d Ath-Chr5: 3456625-3456752 - Eutrema salsugineum Esa-MIR156g Esa-scaffold_2: 3514669-3514800 -
SY-890 Bra-MIR156i Bra-A10: 16972594-16972728 + Eutrema salsugineum Esa-MIR156g Esa-scaffold_2: 3514669-3514800 -
SY-902 Bra-MIR156m Bra-A03: 2090456-2090589 - Eutrema salsugineum Esa-MIR156g Esa-scaffold_2: 3514669-3514800 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Thhalv10003215m 1.0 1 NA
Thhalv10006058m 1.0 1 NA
Thhalv10007832m 1.0 1 NA
Thhalv10007882m 1.0 1 NA
Thhalv10016816m 1.0 1 NA
Thhalv10017406m 1.5 1 NA
Thhalv10018638m 1.5 1 NA
Thhalv10011728m 2.0 1 NA
Thhalv10013892m 2.0 1 NA
Thhalv10021617m 2.0 1 NA
Thhalv10022738m 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference