PmiREN: Plant microRNA Encyclopedia

Esa-MIR156h

Basic info.

miRNA locus ID
Esa-MIR156h

miRNA locus accession
PmiREN005590

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_2 3944906 3945035 +

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

      TATCTA   TAAC   A         -                    GGCT   TT    ACTAG
     G      AGG    AGG GGTGACAGA AGAGAGTGAGCACACATGGT    TTC  GCAT     
     |      |||    ||| ||||||||| ||||||||||||||||||||    |||  ||||     G
     C      TCT    TCC CCACTGTCT TCTCTCATTCGTGTGTATCG    AAG  CGTA     
AAGCT TCTCTC   --CT   -         C                    ----   TT    CTTTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-26	Aly-MIR156e	Aly-scaffold_6: 4871354-4871493 +	Eutrema salsugineum	Esa-MIR156h	Esa-scaffold_2: 3944906-3945035 +
SY-415	Ath-MIR156e	Ath-Chr5: 3867193-3867330 +	Eutrema salsugineum	Esa-MIR156h	Esa-scaffold_2: 3944906-3945035 +
SY-880	Bra-MIR156a	Bra-A02: 2009598-2009739 +	Eutrema salsugineum	Esa-MIR156h	Esa-scaffold_2: 3944906-3945035 +
SY-901	Bra-MIR156l	Bra-A03: 2333604-2333716 +	Eutrema salsugineum	Esa-MIR156h	Esa-scaffold_2: 3944906-3945035 +
SY-909	Bra-MIR156s	Bra-A10: 16564108-16564250 -	Eutrema salsugineum	Esa-MIR156h	Esa-scaffold_2: 3944906-3945035 +
SY-1200	Cru-MIR156b	Cru-scaffold_6: 3853810-3853954 +	Eutrema salsugineum	Esa-MIR156h	Esa-scaffold_2: 3944906-3945035 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10003215m	1.0	1	NA
Thhalv10006058m	1.0	1	NA
Thhalv10007832m	1.0	1	NA
Thhalv10007882m	1.0	1	NA
Thhalv10011728m	1.0	1	NA
Thhalv10013892m	1.0	1	NA
Thhalv10016816m	1.0	1	NA
Thhalv10017406m	1.0	1	NA
Thhalv10018638m	1.0	1	NA
Thhalv10022738m	1.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR156h

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