Esa-MIR157b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
             T  TAATA   T   --         -           T     --T  T     ----   ACA  C   CAT
       GGAGGG GA     AGG TGT  TGACAGAAG ATAGAGAGCAC GAGGA   GA ATGCA    AGC   CA ACA   
       |||||| ||     ||| |||  ||||||||| ||||||||||| |||||   || |||||    |||   || |||    
       TCTCCC CT     TCT ACA  ACTGTCTTC TATCTCTCGTG CTCTT   CT TACGT    TCG   GT TGT   
ATCTCTC      C  -----   T   CT         G           T     TAT  C     CTAA   GGA  -   AAC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-917 Bra-MIR157b Bra-A01: 25099108-25099295 + Eutrema salsugineum Esa-MIR157b Esa-scaffold_7: 4655624-4655775 +
SY-1205 Cru-MIR157a Cru-scaffold_1: 16709634-16709856 - Eutrema salsugineum Esa-MIR157b Esa-scaffold_7: 4655624-4655775 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Thhalv10003215m 1.5 1 NA
Thhalv10006058m 1.5 1 NA
Thhalv10007832m 1.5 1 NA
Thhalv10007882m 1.5 1 NA
Thhalv10009488m 1.5 1 NA
Thhalv10016816m 1.5 1 NA
Thhalv10018638m 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference