PmiREN: Plant microRNA Encyclopedia

Cru-MIR157a

Basic info.

miRNA locus ID
Cru-MIR157a

miRNA locus accession
PmiREN002742

Organism
Capsella rubella

Genomic location
Cru-scaffold_1 16709634 16709856 -

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AGG T  T    ------TGT   T T         -           TA    --  C   - CAAACATACACACAAACGCACATATATTTTATTATATGTCCTTCTGATTATACAT
   G GA ATAG         GGT G TGACAGAAG ATAGAGAGCAC  AGGA  TG TAT G                                                       
   | || ||||         ||| | ||||||||| |||||||||||  ||||  || ||| |                                                        
   C CT TATC         CCA C ACTGTCTTC TATCTCTCGTG  TCCT  TC TCT C                                                       
    T  T    TCTTTCTTT   - T         G           TC    TA  -   A GTCTGCTGTTTAGATCGAGAAGAGAGAAAATAGTTTGTAACTACAATTCATATTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-45	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Capsella rubella	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -
SY-53	Aly-MIR157d	Aly-scaffold_1: 24813797-24814014 -	Capsella rubella	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -
SY-428	Ath-MIR157c	Ath-Chr3: 6244507-6244713 -	Capsella rubella	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -
SY-432	Ath-MIR157d	Ath-Chr1: 18026817-18027028 -	Capsella rubella	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -
SY-721	Bol-MIR157	Bol-C01: 31679965-31680103 +	Capsella rubella	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -
SY-914	Bra-MIR157b	Bra-A01: 25099108-25099295 +	Capsella rubella	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -
SY-1203	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -	Capsella rubella	Cru-MIR157b	Cru-scaffold_3: 6365381-6365595 -
SY-1204	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +
SY-1205	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -	Eutrema salsugineum	Esa-MIR157b	Esa-scaffold_7: 4655624-4655775 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Carub.0001s2589.1	1.5	1	NA
Carub.0001s2590.1	1.5	NA	NA
Carub.0004s2454.1	1.5	1	NA
Carub.0005s2476.1	1.5	1	NA
Carub.0008s0542.1	1.5	1	NA
Carub.0001s0222.1	2.0	NA	NA
Carub.0002s1577.1	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Cru-MIR157a

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