PmiREN: Plant microRNA Encyclopedia

Bol-MIR157

Basic info.

miRNA locus ID
Bol-MIR157

miRNA locus accession
PmiREN024358

Organism
Brassica oleracea

Genomic location
Bol-C01 31679965 31680103 +

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   T           -           T     -   -C    A   ACAAGGAT
GGT GTTGACAGAAG ATAGAGAGCAC AAGGA TGA  ATGC AGT        
||| ||||||||||| ||||||||||| ||||| |||  |||| |||         
CCA TAACTGTCTTC TATCTCTCGTG TTTCT ATT  TACG TTA        
   -           A           T     C   TC    C   AAGGAATA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-42	Aly-MIR157c	Aly-scaffold_3: 7799883-7800109 -	Brassica oleracea	Bol-MIR157	Bol-C01: 31679965-31680103 +
SY-51	Aly-MIR157d	Aly-scaffold_1: 24813797-24814014 -	Brassica oleracea	Bol-MIR157	Bol-C01: 31679965-31680103 +
SY-425	Ath-MIR157c	Ath-Chr3: 6244507-6244713 -	Brassica oleracea	Bol-MIR157	Bol-C01: 31679965-31680103 +
SY-719	Bol-MIR157	Bol-C01: 31679965-31680103 +	Brassica rapa	Bra-MIR157a	Bra-A03: 18966005-18966200 -
SY-720	Bol-MIR157	Bol-C01: 31679965-31680103 +	Brassica rapa	Bra-MIR157b	Bra-A01: 25099108-25099295 +
SY-721	Bol-MIR157	Bol-C01: 31679965-31680103 +	Capsella rubella	Cru-MIR157a	Cru-scaffold_1: 16709634-16709856 -
SY-722	Bol-MIR157	Bol-C01: 31679965-31680103 +	Capsella rubella	Cru-MIR157b	Cru-scaffold_3: 6365381-6365595 -
SY-723	Bol-MIR157	Bol-C01: 31679965-31680103 +	Eutrema salsugineum	Esa-MIR157a	Esa-scaffold_13: 3051829-3052046 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Bol004847	1.5	1	NA
Bol007052	1.5	1	NA
Bol011022	1.5	1	NA
Bol016006	1.5	1	NA
Bol027130	1.5	NA	NA
Bol041769	1.5	1	NA
Bol028594	2.0	1	NA

Mature miRNA conservation

Link

Reference

No reference

Bol-MIR157

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