PmiREN: Plant microRNA Encyclopedia

Esa-MIR157d

Basic info.

miRNA locus ID
Esa-MIR157d

miRNA locus accession
PmiREN005595

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_9 9304808 9304939 -

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TTTGAG     --TT  T    T         -A             T  -      C   TTCGGAA
      AGGCA    GA AGTG TGACAGAAG  TAGAGAGCACAGA GA TGAGAT CAA       
      |||||    || |||| |||||||||  ||||||||||||| || |||||| |||        
      TTTGT    TT TCAC ACTGTCTTC  ATTTCTCGTGTTT CT ATTCTA GTT       
ACCTAA     TTAT  T    T         CG             C  C      C   TTTTGAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-39	Aly-MIR157a	Aly-scaffold_2: 11818138-11818270 -	Eutrema salsugineum	Esa-MIR157d	Esa-scaffold_9: 9304808-9304939 -
SY-424	Ath-MIR157a	Ath-Chr1: 24913184-24913316 -	Eutrema salsugineum	Esa-MIR157d	Esa-scaffold_9: 9304808-9304939 -
SY-920	Bra-MIR157c	Bra-A02: 9519858-9519990 +	Eutrema salsugineum	Esa-MIR157d	Esa-scaffold_9: 9304808-9304939 -
SY-922	Bra-MIR157d	Bra-A07: 21853207-21853339 +	Eutrema salsugineum	Esa-MIR157d	Esa-scaffold_9: 9304808-9304939 -
SY-1207	Cru-MIR157c	Cru-scaffold_2: 8184653-8184783 -	Eutrema salsugineum	Esa-MIR157d	Esa-scaffold_9: 9304808-9304939 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10003215m	1.5	1	NA
Thhalv10006058m	1.5	1	NA
Thhalv10007832m	1.5	1	NA
Thhalv10007882m	1.5	1	NA
Thhalv10009488m	1.5	1	NA
Thhalv10016816m	1.5	1	NA
Thhalv10018638m	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR157d

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