PmiREN: Plant microRNA Encyclopedia

Esa-MIR160c

Basic info.

miRNA locus ID
Esa-MIR160c

miRNA locus accession
PmiREN005602

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_20 2068305 2068426 -

Comments
A member of family MIR160

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TATATATTGATTCACC       C       C          GA    ATA        AG
                  GTCATGC TGGCTCC TGTATGCCAC  GTGG   CTGGTTTT  
                  ||||||| ||||||| ||||||||||  ||||   ||||||||  C
                  CAGTACG ACCGAGG ACGTGCGGTG  CGTC   GGCTAAAA  
AATGGTAAACGAAATTAC       A       A          GC    ---        GT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-79	Aly-MIR160c	Aly-scaffold_8: 677270-677391 +	Eutrema salsugineum	Esa-MIR160c	Esa-scaffold_20: 2068305-2068426 -
SY-462	Ath-MIR160c	Ath-Chr5: 19009076-19009198 -	Eutrema salsugineum	Esa-MIR160c	Esa-scaffold_20: 2068305-2068426 -
SY-937	Bra-MIR160e	Bra-A09: 14418668-14418789 -	Eutrema salsugineum	Esa-MIR160c	Esa-scaffold_20: 2068305-2068426 -
SY-1213	Cru-MIR160c	Cru-scaffold_8: 399218-399340 +	Eutrema salsugineum	Esa-MIR160c	Esa-scaffold_20: 2068305-2068426 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10018331m	0.5	NA	NA
Thhalv10016329m	1.0	NA	NA
Thhalv10024601m	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR160c

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