Esa-MIR164c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
          -T   CTGAG  A     A    CA         CATT         TCTCTTTGCATATA   A   G   T    CTAA      G  TG
    AAGGTG  GTG     CA GATGG GAAG  GGGCACGTG    ACTAGCTCA              TAC CAT CAC CTCC    ATGCAT TA  
    ||||||  |||     || ||||| ||||  |||||||||    |||||||||              ||| ||| ||| ||||    |||||| ||  A
    TTCCAC  CAC     GT CTACC CTTC  CCCGTGTAC    TGATTGAGT              ATG GTA GTG GAGG    TGTGTA AT  
GTAG      TT   ---CA  A     C    TA         TTCT         ------------TA   -   -   T    --TG      G  TT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-95 Aly-MIR164b Aly-scaffold_6: 111763-111961 - Eutrema salsugineum Esa-MIR164c Esa-scaffold_2: 113802-113982 -
SY-477 Ath-MIR164b Ath-Chr5: 287566-287756 + Eutrema salsugineum Esa-MIR164c Esa-scaffold_2: 113802-113982 -
SY-761 Bol-MIR164b Bol-C02: 55672-55845 - Eutrema salsugineum Esa-MIR164c Esa-scaffold_2: 113802-113982 -
SY-957 Bra-MIR164f Bra-A02: 100977-101150 - Eutrema salsugineum Esa-MIR164c Esa-scaffold_2: 113802-113982 -
SY-1216 Cru-MIR164c Cru-scaffold_6: 26048-26250 - Eutrema salsugineum Esa-MIR164c Esa-scaffold_2: 113802-113982 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Thhalv10004550m 0.5 1 NA
Thhalv10014081m 0.5 1 NA
Thhalv10011659m 1.0 1 NA
Thhalv10013863m 1.0 1 NA
Thhalv10021186m 1.0 1 NA
Thhalv10021297m 1.0 1 NA
Thhalv10027326m 1.5 2 NA
Thhalv10004583m 2.0 2 NA
Thhalv10021393m 2.0 2 NA
Thhalv10027479m 2.0 2 NA
Thhalv10027874m 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference