PmiREN: Plant microRNA Encyclopedia

Esa-MIR166h

Basic info.

miRNA locus ID
Esa-MIR166h

miRNA locus accession
PmiREN005616

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_6 1539129 1539256 -

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GAAGCGATCTAG    T  A      TT      C      -    GA     AATTCTTTAA
              GGTT AG GGAATG  GTTTGG TCGAGG TCAT  AGAGT          
              |||| || ||||||  |||||| |||||| ||||  |||||          C
              CCAA TC CCTTAC  CGGACC GGCTCT AGTA  TCTCG          
TTGACGCTATTTAT    C  C      TT      A      T    AA     GAATATAAAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-133	Aly-MIR166c	Aly-scaffold_6: 3626977-3627123 +	Eutrema salsugineum	Esa-MIR166h	Esa-scaffold_6: 1539129-1539256 -
SY-145	Aly-MIR166g	Aly-scaffold_8: 21095447-21095574 +	Eutrema salsugineum	Esa-MIR166h	Esa-scaffold_6: 1539129-1539256 -
SY-510	Ath-MIR166c	Ath-Chr5: 2838632-2838777 +	Eutrema salsugineum	Esa-MIR166h	Esa-scaffold_6: 1539129-1539256 -
SY-522	Ath-MIR166g	Ath-Chr5: 25504795-25504922 +	Eutrema salsugineum	Esa-MIR166h	Esa-scaffold_6: 1539129-1539256 -
SY-1220	Cru-MIR166c	Cru-scaffold_6: 2828675-2828826 +	Eutrema salsugineum	Esa-MIR166h	Esa-scaffold_6: 1539129-1539256 -
SY-1223	Cru-MIR166g	Cru-scaffold_8: 11863928-11864056 +	Eutrema salsugineum	Esa-MIR166h	Esa-scaffold_6: 1539129-1539256 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10011238m	0.5	NA	NA
Thhalv10006792m	1.0	NA	NA
Thhalv10012678m	1.0	NA	NA
Thhalv10016241m	1.0	NA	NA
Thhalv10024403m	1.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR166h

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