PmiREN: Plant microRNA Encyclopedia

Esa-MIR167a

Basic info.

miRNA locus ID
Esa-MIR167a

miRNA locus accession
PmiREN005617

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_13 8096158 8096343 +

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TAC     -  ---TAG      -TT                  T     C       AAGATTCATG   AACTAAGTAAAGCTAATACAGATTATATAT
   CGTGC AC      TAGCAG   AAGCTGCCAGCATGATCT GTCTT CTCTCTC          TAT                              
   ||||| ||      ||||||   |||||||||||||||||| ||||| |||||||          |||                              T
   GTACG TG      ATCGTC   TTTGATGGTCGTACTGGA CAGAG GAGAGAG          TTC                              
        A  TTAGTA      CAC                  T     A       ---------C   GATAATAGTATATTAGAATGTTCTTGTTCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-165	Aly-MIR167c	Aly-scaffold_3: 1657178-1657357 -	Eutrema salsugineum	Esa-MIR167a	Esa-scaffold_13: 8096158-8096343 +
SY-535	Ath-MIR167c	Ath-Chr3: 1306611-1306790 -	Eutrema salsugineum	Esa-MIR167a	Esa-scaffold_13: 8096158-8096343 +
SY-1194	Bra-MIRN355	Bra-A05: 27285139-27285303 -	Eutrema salsugineum	Esa-MIR167a	Esa-scaffold_13: 8096158-8096343 +
SY-1226	Cru-MIR167c	Cru-scaffold_3: 1312452-1312646 -	Eutrema salsugineum	Esa-MIR167a	Esa-scaffold_13: 8096158-8096343 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10006747m	2.0	NA	NA
Thhalv10018139m	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR167a

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