PmiREN: Plant microRNA Encyclopedia

Esa-MIR167d

Basic info.

miRNA locus ID
Esa-MIR167d

miRNA locus accession
PmiREN005620

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_19 56968 57101 -

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CAAC   ---  AA     TA     A    - -C           T   T    GG   ATG      GA
    TCC   AC  GGGAA  AGTGA GCTG C  AGCATGATCTA CTT GGTT  GAG   AATGTG  
    |||   ||  |||||  ||||| |||| |  ||||||||||| ||| ||||  |||   ||||||   
    AGG   TG  TCCTT  TCACT CGAC G  TCGTACTGGAT GAA CCAA  TTC   TTATAC  
TACC   ATT  -G     CC     C    A TC           C   C    AA   --G      AA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-161	Aly-MIR167b	Aly-scaffold_5: 21158390-21158522 +	Eutrema salsugineum	Esa-MIR167d	Esa-scaffold_19: 56968-57101 -
SY-532	Ath-MIR167b	Ath-Chr3: 23406157-23406289 +	Eutrema salsugineum	Esa-MIR167d	Esa-scaffold_19: 56968-57101 -
SY-808	Bol-MIR167c	Bol-C04: 15204526-15204657 +	Eutrema salsugineum	Esa-MIR167d	Esa-scaffold_19: 56968-57101 -
SY-1225	Cru-MIR167b	Cru-scaffold_5: 13665195-13665329 +	Eutrema salsugineum	Esa-MIR167d	Esa-scaffold_19: 56968-57101 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10011887m	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR167d

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