Esa-MIR168a

Basic info.

• miRNA locus ID
• Esa-MIR168a

• miRNA locus accession
• PmiREN005621

• Organism
• Eutrema salsugineum

• Genomic location
• Esa-scaffold_1  14148026  14148166  -

• Comments
• A member of family MIR168

• Confidence level
• 

Secondary strurture and sequence

 AG     -  T      G      C         G      AG      --   G   C     - TT ACCT
   TCACC GT GGGCTC GATTCG TTGGTGCAG TCGGGA  CAATTG  GCT ACA GACCA C  G    
   ||||| || |||||| |||||| ||||||||| ||||||  ||||||  ||| ||| ||||| |  |     
   AGTGG CG TCCGGG CTAAGT AACTACGTC AGCCCT  GTTAAT  CGA TGT TTGGT G  C    
AAA     T  T      G      C         -      AG      GA   G   -     T TT CTTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3396
• Chromosome: Esa-scaffold_1
• Cluster start: 14140536
• Cluster end: 14148166

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference