PmiREN: Plant microRNA Encyclopedia

Esa-MIR169b

Basic info.

miRNA locus ID
Esa-MIR169b

miRNA locus accession
PmiREN005626

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_7 919569 919686 -

Comments
A member of family MIR169

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  G      C  A   T     T         AT         AATA    AAC     TCA
   GAAAAG AG GAA GAGAT GAGCCAAAG  GACTTGCCG    GACG   GAATC   
   |||||| || ||| ||||| |||||||||  |||||||||    ||||   |||||    
   CTTTTC TC CTT CTTTG CTCGGTTTC  TTGAACGGC    CTGT   TTTAG   
TAG      T  A   C     T         AG         ----    GGT     TGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-565	Ath-MIR169e	Ath-Chr1: 20041566-20041682 +	Eutrema salsugineum	Esa-MIR169b	Esa-scaffold_7: 919569-919686 -
SY-833	Bol-MIR169e	Bol-C06: 21156226-21156337 -	Eutrema salsugineum	Esa-MIR169b	Esa-scaffold_7: 919569-919686 -
SY-1037	Bra-MIR169r	Bra-A06: 678807-678928 -	Eutrema salsugineum	Esa-MIR169b	Esa-scaffold_7: 919569-919686 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10014346m	1.0	1	NA
Thhalv10021244m	1.0	1	NA
Thhalv10025471m	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR169b

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