Bol-MIR169e

Basic info.

• miRNA locus ID
• Bol-MIR169e

• miRNA locus accession
• PmiREN002347

• Organism
• Brassica oleracea

• Genomic location
• Bol-C06  21156226  21156337  -

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

       AC      T  T  T         AT         ---A   AT      AA
  GGAAA  AGAGAA GA AT GAGCCAAAG  GACTTGCCG    CCA  GAATCA  
  |||||  |||||| || || |||||||||  |||||||||    |||  ||||||  A
  CTTTT  TCTCTT CT TG CTCGGTTTC  TTGAACGGC    GGT  TTTAGT  
AG     CT      C  T  T         AG         CAAC   --      CA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019
• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013