Bol-MIR169b

Basic info.

• miRNA locus ID
• Bol-MIR169b

• miRNA locus accession
• PmiREN002344

• Organism
• Brassica oleracea

• Genomic location
• Bol-C03  56791745  56791864  +

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

       AT      T  T  T         ATG           TTACAG  G   TA   TAA
  GGAAA  AGAGAA GA AC GAGCCAAAG   ACTTGCCGATT      AT AAT  ATC   
  |||||  |||||| || || |||||||||   |||||||||||      || |||  |||    
  CTTTT  TCTCTT CT TG CTCGGTTTC   TGAACGGCTAA      TG TTA  TAG   
AG     CT      C  T  T         AGA           ------  G   --   TCA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3267
• Chromosome: Bol-C03
• Cluster start: 56791745
• Cluster end: 56799382

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019
• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013