Bol-MIR169f

Basic info.

• miRNA locus ID
• Bol-MIR169f

• miRNA locus accession
• PmiREN002348

• Organism
• Brassica oleracea

• Genomic location
• Bol-C03  56799264  56799382  +

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

  G     AT      T  TAAT         A          ATT      AAGAATTTA
   GGAAA  AGAGAA GA    GAGCCAAAG TGACTTGCCG   TTACCA         
   |||||  |||||| ||    ||||||||| ||||||||||   ||||||         A
   CTTTT  TCTCTT CT    CTCGGTTTC GCTGAACGGT   AGTGGT         
TAG     CT      C  TTGT         A          --C      AATAGTCAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3267
• Chromosome: Bol-C03
• Cluster start: 56791745
• Cluster end: 56799382

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019
• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013