PmiREN: Plant microRNA Encyclopedia

Esa-MIR394b

Basic info.

miRNA locus ID
Esa-MIR394b

miRNA locus accession
PmiREN005645

Organism
Eutrema salsugineum

Genomic location
Esa-scaffold_9 1977466 1977599 -

Comments
A member of family MIR394

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     T    T     GA   -      TTC           T   TATT     TG    TAA   TA
 AGAG TTCT ACAGA  TCT TTGGCA   TGTCCACCTCC CTC    ATACA  TGTA   GTA  
 |||| |||| |||||  ||| ||||||   ||||||||||| |||    |||||  ||||   |||   
 TCTT GGGA TGTCT  AGA GACCGT   ACGGGTGGAGG GAG    TGTGT  GCGT   TAT  
T    T    T     AG   T      CAT           T   TGTT     TT    --C   GC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID	miRNA locus 1	miRNA locus 1 position	Organism	miRNA locus 2	miRNA locus 2 position
SY-308	Aly-MIR394b	Aly-scaffold_2: 17011862-17011982 +	Eutrema salsugineum	Esa-MIR394b	Esa-scaffold_9: 1977466-1977599 -
SY-660	Ath-MIR394b	Ath-Chr1: 28568801-28568936 +	Eutrema salsugineum	Esa-MIR394b	Esa-scaffold_9: 1977466-1977599 -
SY-1142	Bra-MIR394c	Bra-A07: 19165563-19165689 -	Eutrema salsugineum	Esa-MIR394b	Esa-scaffold_9: 1977466-1977599 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Thhalv10007553m	1.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Esa-MIR394b

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