Esa-MIR399a

Basic info.

• miRNA locus ID
• Esa-MIR399a

• miRNA locus accession
• PmiREN005659

• Organism
• Eutrema salsugineum

• Genomic location
• Esa-scaffold_6  2179554  2179694  -

• Comments
• A member of family MIR399

• Confidence level
• 

Secondary strurture and sequence

 CAA     -A       A        T      A        C  G CT    TTTT   ---   TTTGTG
    TAAGC  GAGCAGT ATAGGGCA CTTTCT TTGGCAGG GA A  GCAA    GCT   CAT      
    |||||  ||||||| |||||||| |||||| |||||||| || |  ||||    |||   |||      T
    ATTCG  TTCGTCA TGTCCCGT GAGAGG AACCGTTC CT T  CGTT    CGG   GTG      
ATAA     CC       C        T      A        A  G CT    -TAT   TTT   TTGTTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference