PmiREN: Plant microRNA Encyclopedia

Mac-MIR159a

Basic info.

miRNA locus ID
Mac-MIR159a

miRNA locus accession
PmiREN012012

Organism
Musa acuminata

Genomic location
Mac-chr4 10109392 10109631 +

Comments
A member of family MIR159

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

      ---  --    TTGAAGTCCAAAGGAGGGTCTTGGTTGGGTGGATTGAGCTGCTGGTTTATGGATTCCACTGCCCTATTCCATGTTTTTCTTTGCTATAGTTGATGACAAAGATGGTG
    GG   AG  CTCC                                                                                                           
    ||   ||  ||||                                                                                                           A
    AC   TG  GTTG                                                                                                           
CTTT  TTT  TT    TCTTTCAACCTCATTTGTCTACATCTCGAGGGAAGTTAGGTTTATTTCCAGTCCGACCCAACTACGTCGAGGACTCAATACGTTTGGTGTTCGGATAGGGTTTTGTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3824
Chromosome: Mac-chr4
Cluster start: 10099736
Cluster end: 10109631

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Mac-MIR159a , Mac-MIR159d	PmiREN012012, PmiREN012015	Mac-chr4	+	10099736	10109631

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr1T01660_001	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR159a

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