PmiREN: Plant microRNA Encyclopedia

Mac-MIR162e

Basic info.

miRNA locus ID
Mac-MIR162e

miRNA locus accession
PmiREN012029

Organism
Musa acuminata

Genomic location
Mac-chr4 4712551 4712711 +

Comments
A member of family MIR162

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GCAGCAATCGAGT  TC      C    C            TC    T   C    C      TTTT     -T   TT GA
               GA  TCTGGA GCAG GGTTTATCGATC  TTCC GGC TTGT GGTCTC    CGGGG  GGA  C  
               ||  |||||| |||| ||||||||||||  |||| ||| |||| ||||||    |||||  |||  |   
               CT  AGGCCT CGTC CCAAATAGCTGG  AAGG CCG AACA TTGGAG    GTTCT  TCT  G  
CTTACCAACAGCCGC  TC      A    T            CT    -   A    -      --TC     TT   TT GT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3823
Chromosome: Mac-chr4
Cluster start: 4702950
Cluster end: 4712711

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Mac-MIR162d , Mac-MIR162e	PmiREN012028, PmiREN012029	Mac-chr4	+	4702950	4712711

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr2T19780_001	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR162e

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