PmiREN: Plant microRNA Encyclopedia

Mac-MIR167k

Basic info.

miRNA locus ID
Mac-MIR167k

miRNA locus accession
PmiREN012075

Organism
Musa acuminata

Genomic location
Mac-chr1 3891135 3891344 +

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GAA       ---      T              --             CA     AAAAGCTAGA          --AAACCC    GTA  -   GA    -ACT  GCCA
   GTGCCCA   AGGGAA GAGTGAAGCTGCCA  GCATGATCTAGCT  AGGAT          TTTTGATCAT        TCTT   GC TTT  AGGA    TG    
   |||||||   |||||| ||||||||||||||  |||||||||||||  |||||          ||||||||||        ||||   || |||  ||||    ||     
   CGCGGGT   TCCCTT TTTACTTCGACGGT  CGTACTGGATCGG  TCCTA          GAAATTAGTA        AGAA   CG AGA  TCCT    AC    
 AA       CGT      C              CT             --     ---ATTACAG          CAAAAGTA    -AC  T   GG    AAGT  AAAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3810
Chromosome: Mac-chr1
Cluster start: 3891135
Cluster end: 3895870

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Mac-MIR167b , Mac-MIR167k	PmiREN012066, PmiREN012075	Mac-chr1	+	3891135	3895870

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr6T34320_001	NA	NA	2 (1)

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR167k

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