Mac-MIR396u

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 TACGTA     -       C   C            C          TCTG     CTCA
       TGATC CTATTTG AGT TTCCACAGCTTT TTGAACTGCA    TTCTT    
       ||||| ||||||| ||| |||||||||||| ||||||||||    |||||     
       ACTAG GGTGGAC TCA AGGGTGTCGAAA AACTTGGCGT    AAGGG    
ACGATAA     A       A   A            T          --TA     TCTC

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Mac-MIR396i ,   Mac-MIR396u PmiREN012191, PmiREN012203 Mac-chr6 + 33451819 33454122

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr4T11940_001 1.5 NA NA
GSMUA_Achr4T25410_001 1.5 NA NA
GSMUA_Achr1T01940_001 2.0 NA NA
GSMUA_Achr4T29440_001 2.0 NA NA
GSMUA_Achr8T06840_001 2.0 NA NA
GSMUA_Achr8T07840_001 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference