Pha-MIR156c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GGA   A      -----   A          -     -               GCCT   TT     ATGAATG
   AGG GAGAGG     TGG GGCTGACAGA AGAGA GTGAGCACACATGGT    TTC  GCATG       
   ||| ||||||     ||| |||||||||| ||||| |||||||||||||||    |||  |||||       G
   TCC CTCTTC     ATC CCGGCTGTCT TCTCT CACTCGTGTGTATCG    AAG  CGTAC       
  C   -      CTAAG   A          C     T               ----   TT     CTGAGAC

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Pha-MIR156c ,   Pha-MIR156i PmiREN016183, PmiREN016189 Pha-Chr05 + 57105061 57105576

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.1G031800.1 1.0 NA NA
PhHAL.1G053500.1 1.0 1 NA
PhHAL.2G302100.1 1.0 NA NA
PhHAL.2G313900.1 1.0 NA NA
PhHAL.2G372100.1 1.0 1 NA
PhHAL.2G372200.1 1.0 1 NA
PhHAL.5G037100.1 1.0 NA NA
PhHAL.6G248800.1 1.0 NA NA
PhHAL.6G265100.1 1.0 NA NA
PhHAL.7G237000.1 1.0 NA NA
PhHAL.8G162200.1 1.0 NA NA
PhHAL.4G067300.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference