Pha-MIR159a

Basic info.

• miRNA locus ID
• Pha-MIR159a

• miRNA locus accession
• PmiREN016190

• Organism
• Panicum hallii

• Genomic location
• Pha-Chr05  53903901  53904052  +

• Comments
• A member of family MIR159

• Confidence level
• 

Secondary strurture and sequence

       TTTG     T   ---A     G    T     GTTC    TGT         TC    TCCAGAGAGAGAGAT
  GGTCG    AAGGG GGC    CAGCT CTCG TCATG    CCAC   CCTATCTCA  GGCT               
  |||||    ||||| |||    ||||| |||| |||||    ||||   |||||||||  ||||                
  CCAGT    TTCCC CTG    GTCGA GAGC AGTAC    GGTG   GGATAGAGT  TTGG               
CG     --CG     -   CTAC     G    C     GTTT    TTC         --    TTAGTAGATTATATA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 3955
• Chromosome: Pha-Chr05
• Cluster start: 53900374
• Cluster end: 53904052

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference