Pha-MIR166a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TTGG       ------               TT G    C    G  A  -  ---C    --    TT     TG
    TCATGGG      GGCTTGTGGGGAATG  G CTGG TCGA GC TC CG    GTCC  TAGC  GCAGC  
    |||||||      |||||||||||||||  | |||| |||| || || ||    ||||  ||||  |||||  A
    GGTACCT      CCGAACGCTCCTTAC  C GACC GGCT CG AG GC    CGGG  GTCG  CGTCG  
           ATGTGA               TT G    A    G  G  A  TAGA    CC    TC     CT

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Pha-MIR166a ,   Pha-MIR166b PmiREN016203, PmiREN016204 Pha-Chr01 - 55556438 55556798

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.3G471000.1 1.0 NA NA
PhHAL.5G517200.1 1.0 NA NA
PhHAL.9G150700.1 1.0 NA NA
PhHAL.9G210800.1 1.0 NA NA
PhHAL.9G646900.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference