PmiREN: Plant microRNA Encyclopedia

Pvi-MIR156j

Basic info.

miRNA locus ID
Pvi-MIR156j

miRNA locus accession
PmiREN016285

Organism
Panicum virgatum

Genomic location
Pvi-Chr05N 6746494 6746620 -

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GGGA  --       --   -A    T      -             A      GGTT          AG
    GT  TGGGTTT  TGA  GGTT GACAGA AGAGAGTGAGCAC CACGGT    TCTTAGCATG  
    ||  |||||||  |||  |||| |||||| ||||||||||||| ||||||    ||||||||||  T
    CA  ACCCGGA  ACT  CCGA CTGTCT TCTCTCACTCGTG GTGTCG    AGGGTCGTAC  
   T  CT       TT   CA    -      A             C      ----          CG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3962
Chromosome: Pvi-Chr05N
Cluster start: 6746494
Cluster end: 6747014

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Pvi-MIR156i , Pvi-MIR156j	PmiREN016284, PmiREN016285	Pvi-Chr05N	-	6746494	6747014

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.2KG323200.1	0.5	0	NA
Pavir.1KG043600.1	1.0	NA	NA
Pavir.1NG028400.1	1.0	NA	NA
Pavir.2NG390400.1	1.0	NA	NA
Pavir.6NG315100.1	1.0	1	NA
Pavir.J565400.1	1.0	NA	NA
Pavir.1KG076500.1	1.5	1	NA
Pavir.1NG068600.1	1.5	1	NA
Pavir.4KG340200.1	1.5	NA	NA
Pavir.4KG366000.1	1.5	1	NA
Pavir.5KG736000.1	1.5	NA	NA
Pavir.5KG740800.1	1.5	NA	NA
Pavir.6NG323100.1	1.5	NA	NA
Pavir.6NG327200.1	1.5	1	NA
Pavir.2KG430000.1	2.0	1	NA
Pavir.2KG430400.1	2.0	1	NA
Pavir.2NG419300.1	2.0	NA	NA
Pavir.2NG422000.1	2.0	NA	NA
Pavir.2NG503500.1	2.0	1	NA
Pavir.2NG503700.1	2.0	NA	NA
Pavir.7KG279200.1	2.0	NA	NA
Pavir.8KG346000.1	2.0	1	NA
Pavir.8NG253200.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Field-grown miR156 transgenic switchgrass reproduction, yield, global gene expression analysis, and bioconfinement. Biotechnol Biofuels, 2017

>The miR156-SPL4 module predominantly regulates aerial axillary bud formation and controls shoot architecture. New Phytol, 2017

>Switchgrass SBP-box transcription factors PvSPL1 and 2 function redundantly to initiate side tillers and affect biomass yield of energy crop. Biotechnol Biofuels, 2016

>Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production. Plant Biotechnol J, 2012