Pvi-MIR159f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GGATGGTTG     -  A           A   T     T  AG    CTTTC  -T   -T    A     G    T     GTTC    -TAT             CTGGAGGGTTTATCTCAGAGAGAGA
         GATTG GA GCGGAGCTCCT TCA TCCAA GA  GGTC     GC  GGG  TGGT CAGCT CTCG TCATG    CCAC    CCTATCTCATCTC                         
         ||||| || ||||||||||| ||| ||||| ||  ||||     ||  |||  |||| ||||| |||| |||||    ||||    |||||||||||||                          
         CTAGT CT CGTCTCGAGGG AGT AGGTT CT  CCGG     CG  CCC  GCCA GTCGA GAGC AGTAC    GGTG    GGATAGAGTTCGG                         
              T  G           A   T     T  CG    ----T  TT   TT    C     G    C     GTTC    TTTC             TTTGTGGTCCGGTGAGTAGAGAGGG

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Pvi-MIR159b ,   Pvi-MIR159f PmiREN016298, PmiREN016302 Pvi-Chr05N - 16080078 16087932

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.5KG021900.1 0.5 0 NA
Pavir.2KG407800.1 1.5 1 NA
Pavir.1KG066900.1 2.0 NA NA
Pavir.2KG411700.1 2.0 2 NA
Pavir.5KG592000.1 2.0 NA NA
Pavir.5KG598200.1 2.0 NA NA
Pavir.5NG548200.1 2.0 NA NA
Pavir.6KG359100.1 2.0 2 NA
Pavir.6NG301900.1 2.0 2 NA
Pavir.7KG277700.1 2.0 2 NA
Pavir.7NG272700.1 2.0 2 NA
Pavir.J316300.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference