PmiREN: Plant microRNA Encyclopedia

Pvi-MIR167h

Basic info.

miRNA locus ID
Pvi-MIR167h

miRNA locus accession
PmiREN016353

Organism
Panicum virgatum

Genomic location
Pvi-Chr04N 48286602 48286734 +

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TG         -        T         C            C  CTCA   G      C  GAAC
   TTTGCTGGT GTGAGAGG TGAAGCTGC AGCATGATCTGG TG    ATC CCGGGC CT    
   ||||||||| |||||||| ||||||||| |||||||||||| ||    ||| |||||| ||    T
   GAACGACCA CGCTCTCC ACTTCGATG TTGTACTAGACC AC    TAG GGTCTG GA    
GTT         A        C         -            -  TTCG   A      T  AGTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3960
Chromosome: Pvi-Chr04N
Cluster start: 48286602
Cluster end: 48293836

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Pvi-MIR167h , Pvi-MIR167r	PmiREN016353, PmiREN016363	Pvi-Chr04N	+	48286602	48293836

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.4NG178100.1	2.0	NA	NA
Pavir.9NG197900.1	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR167h

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