Sit-MIR167g

Basic info.

• miRNA locus ID
• Sit-MIR167g

• miRNA locus accession
• PmiREN018651

• Organism
• Setaria italica

• Genomic location
• Sit-scaffold_3  48338901  48339056  +

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

CAA       ----      T      A    C  -            TT     G   TCATC  C     ---  C     TCA
   ATGCTCA    TGTGAA GAGTGA GCTG CA GCATGATCTAGC  TGGTT GCA     GG ACACC   CA AATCA   
   |||||||    |||||| |||||| |||| || ||||||||||||  ||||| |||     || |||||   || |||||    
   TACGAGT    ACACTT TTTACT CGAC GT CGTACTAGATTG  ACTAA CGT     CC TGTGG   GT TTAGT   
  A       TGTA      C      C    A  A            TT     A   -----  A     TCC  -     TAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 4101
• Chromosome: Sit-scaffold_3
• Cluster start: 48338901
• Cluster end: 48341005

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• Link To PNDB

Reference

• No reference