Sit-MIR169c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
        A           A A  C          -            ---     TGACGT    CG    -    A   ACATAC
     GGG TAGAGAGTAGG G TG AGCCAAGGAT GACTTGCCGGCG   GCGGT      TTGC  GCAT ATGT TGT      
     ||| ||||||||||| | || |||||||||| ||||||||||||   |||||      ||||  |||| |||| |||       
     TCC GTCTCTCGTTC C AC TCGGTTCCTG CTGAACGGCCGT   TGCCG      AGTG  CGTA TACA ACA      
TACTG   -           - -  A          T            TCT     TTTATT    --    C    G   GACAGA

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Sit-MIR169c ,   Sit-MIR169d PmiREN018658, PmiREN018659 Sit-scaffold_6 - 1522499 1523981

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.3G390000.1 1.5 NA NA
Seita.9G155700.1 1.5 NA NA
Seita.1G338100.1 2.0 2 NA
Seita.2G383900.1 2.0 NA NA
Seita.5G055500.1 2.0 NA NA
Seita.5G055600.1 2.0 1 NA
Seita.9G010300.1 2.0 NA NA
Seita.9G367200.1 2.0 NA NA
Seita.9G521100.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference