Sit-MIR396b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AAAGGTGCGCGG     C      CA                G   TC    -   GGCGTGTCGGACGGATGCAAACTCCCAGCAATTCTCTTCC
              GCATG TTTCCA  GGCTTTCTTGAACTGT AAC  GTGG GGG                                        
              ||||| ||||||  |||||||||||||||| |||  |||| |||                                        C
              CGTAC AAAGGT  CCGAAAGAACTTGGTA TTG  CATC CGG                                        
CTCGTGTTCTCCGA     C      AC                G   TC    T   CTGGCTCCGCTCGGGCTCTCGAGCCGTTAAGTTAAGTGCC

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Sit-MIR396b ,   Sit-MIR396e PmiREN018698, PmiREN018701 Sit-scaffold_3 - 1000797 1004811

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.1G271800.1 0.0 0 NA
Seita.1G287100.1 0.0 0 NA
Seita.1G338700.1 0.0 0 NA
Seita.3G017900.1 0.0 0 NA
Seita.4G012400.1 0.0 NA NA
Seita.4G086400.1 0.0 0 NA
Seita.7G224500.1 0.0 NA NA
Seita.9G141900.1 0.0 NA NA
Seita.8G149500.1 1.5 NA NA
Seita.9G107700.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference