By miRNA identifier or keyword

By Sequence

• Search method Choose BLASTN
• Database mature miRNA Pre-miRNA
• Species ALL Actinidia_chinensis Amborella_trichopoda Arabidopsis_halleri Arabidopsis_lyrata Arabidopsis_thaliana Asparagus_officinalis Brachypodium_distachyon Brassica_juncea Brassica_napus Brassica_nigra Brassica_oleracea Brassica_rapa Capsella_rubella Capsicum_annuum Carica_papaya Carthamus_tinctorius Chlamydomonas_reinhardtii Cicer_arietinum Citrullus_lanatus Citrus_clementina Citrus_maxima Citrus_sinensis Cucumis_melo Cucumis_sativus Cucurbita_maxima Cucurbita_moschata Erythranthe_guttata Eutrema_salsugineum Fagus_sylvatica Fragaria_ananassa Fragaria_vesca Fraxinus_excelsior Ginkgo_biloba Glycine_max Gossypium_arboreum Gossypium_barbadense Gossypium_hirsutum Hevea_brasiliensis Hibiscus_syriacus Ipomoea_batatas Jatropha_curcas Lactuca_sativa Lagenaria_siceraria Lotus_japonicus Manihot_esculenta Medicago_truncatula Musa_acuminata Nelumbo_nucifera Nicotiana_benthamiana Nicotiana_tabacum Olea_europaea Oryza_glaberrima Oryza_nivara Oryza_rufipogon Oryza_sativa Panicum_hallii Panicum_virgatum Persea_americana Phalaenopsis_aphrodite Phaseolus_vulgaris Phoenix_dactylifera Physcomitrella_patens Picea_abies Pisum_sativum Populus_euphratica Populus_trichocarpa Prunus_persica Punica_granatum Quercus_robur Ricinus_communis Saccharum_hybrid_cultivar Selaginella_moellendorffii Setaria_italica Silene_latifolia Solanum_habrochaites Solanum_lycopersicum Solanum_melongena Solanum_pennellii Solanum_pimpinellifolium Solanum_tuberosum Sorghum_bicolor Spirodela_polyrhiza Triticum_aestivum Vigna_unguiculata Vitis_vinifera Volvox_carteri Zea_mays Zostera_marina

• or upload sequence fasta file
• Yourfile.fa

[ + ] Algorithm parameters

By genomic location

• Species Choose 25 lycophytes and ferns from Xuemei Chen's data Actinidia chinensis Amborella trichopoda Arabidopsis halleri Arabidopsis lyrata Arabidopsis thaliana Arachis duranensis Arachis ipaensis Arachis monticola Asparagus officinalis Brachypodium distachyon Brassica juncea Brassica napus Brassica nigra Brassica oleracea Brassica rapa Cajanus cajan Camelina sativa Camellia sinensis Capsella rubella Capsicum annuum Carica papaya Carthamus tinctorius Catharanthus roseus Cenchrus americanus Chenopodium quinoa Chlamydomonas reinhardtii Cicer arietinum Cicer reticulatum Citrullus lanatus Citrus clementina Citrus maxima Citrus reticulata Citrus sinensis Cocos nucifera Coffea arabica Coffea canephora Cucumis melo Cucumis sativus Cucurbita maxima Cucurbita moschata Cuscuta campestris Daucus carota Eleusine coracana Eragrostis tef Erythranthe guttata Eucalyptus grandis Eutrema salsugineum Fagus sylvatica Fragaria ananassa Fragaria vesca Fraxinus excelsior Ginkgo biloba Glycine max Glycine max-58-161 Glycine max-Amsoy Glycine max-Dong_Nong_No.50 Glycine max-Feng_Di_Huang Glycine max-Han_Dou_No.5 Glycine max-Hei_He_No.43 Glycine max-Jin_Dou_No.23 Glycine max-Ji_Dou_No.17 Glycine max-Ju_Xuan_No.23 Glycine max-Ke_Shan_No.1 Glycine max-PI_398296 Glycine max-PI_548362 Glycine max-Qi_Huang_No.34 Glycine max-Shi_Sheng_Chang_Ye Glycine max-Tie_Feng_No.18 Glycine max-Tie_Jia_Si_Li_Huang Glycine max-Tong_Shan_Tian_E_Dan Glycine max-Wan_Dou_No.28 Glycine max-Xu_Dou_No.1 Glycine max-Yu_Dou_No.22 Glycine max-Zhang_Chun_Man_Cang_Jin Glycine max-Zhutwinning2 Glycine max-Zi_Hua_No.4 Glycine soja-PI_549046 Glycine soja-PI_562565 Glycine soja-PI_578357 Gossypium arboreum Gossypium barbadense Gossypium hirsutum Helianthus annuus Hevea brasiliensis Hibiscus syriacus Hordeum vulgare Humulus lupulus Ipomoea batatas Jatropha curcas Juglans regia Lactuca sativa Lagenaria siceraria Lotus japonicus Malus domestica Manihot esculenta Medicago truncatula Moringa oleifera Musa acuminata Nelumbo nucifera Nicotiana attenuata Nicotiana benthamiana Nicotiana tabacum Olea europaea Oryza glaberrima Oryza nivara Oryza rufipogon Oryza sativa Oryza sativa ssp. Indica Panax notoginseng Panicum hallii Panicum virgatum Persea americana Phalaenopsis aphrodite Phaseolus vulgaris Phoenix dactylifera Physcomitrella patens Picea abies Pisum sativum Pogostemon cablin Populus euphratica Populus trichocarpa Prunus avium Prunus dulcis Prunus persica Punica granatum Quercus robur Raphanus sativus Ricinus communis Saccharum hybrid cultivar Salvia miltiorrhiza Salvinia cucullata Selaginella moellendorffii Setaria italica Silene latifolia Solanum habrochaites Solanum lycopersicum Solanum melongena Solanum pennellii Solanum pimpinellifolium Solanum tuberosum Sorghum bicolor Spinacia oleracea Spirodela polyrhiza Tarenaya hassleriana Theobroma cacao Triticum aestivum Vaccinium corymbosum Vigna radiata Vigna unguiculata Vitis vinifera Volvox carteri Zea mays Ziziphus jujuba Zostera marina
• Chr

• Start
• End

By clusters

• Species Choose 25 lycophytes and ferns from Xuemei Chen's data Actinidia chinensis Amborella trichopoda Arabidopsis halleri Arabidopsis lyrata Arabidopsis thaliana Arachis duranensis Arachis ipaensis Arachis monticola Asparagus officinalis Brachypodium distachyon Brassica juncea Brassica napus Brassica nigra Brassica oleracea Brassica rapa Cajanus cajan Camelina sativa Camellia sinensis Capsella rubella Capsicum annuum Carica papaya Carthamus tinctorius Catharanthus roseus Cenchrus americanus Chenopodium quinoa Chlamydomonas reinhardtii Cicer arietinum Cicer reticulatum Citrullus lanatus Citrus clementina Citrus maxima Citrus reticulata Citrus sinensis Cocos nucifera Coffea arabica Coffea canephora Cucumis melo Cucumis sativus Cucurbita maxima Cucurbita moschata Cuscuta campestris Daucus carota Eleusine coracana Eragrostis tef Erythranthe guttata Eucalyptus grandis Eutrema salsugineum Fagus sylvatica Fragaria ananassa Fragaria vesca Fraxinus excelsior Ginkgo biloba Glycine max Glycine max-58-161 Glycine max-Amsoy Glycine max-Dong_Nong_No.50 Glycine max-Feng_Di_Huang Glycine max-Han_Dou_No.5 Glycine max-Hei_He_No.43 Glycine max-Jin_Dou_No.23 Glycine max-Ji_Dou_No.17 Glycine max-Ju_Xuan_No.23 Glycine max-Ke_Shan_No.1 Glycine max-PI_398296 Glycine max-PI_548362 Glycine max-Qi_Huang_No.34 Glycine max-Shi_Sheng_Chang_Ye Glycine max-Tie_Feng_No.18 Glycine max-Tie_Jia_Si_Li_Huang Glycine max-Tong_Shan_Tian_E_Dan Glycine max-Wan_Dou_No.28 Glycine max-Xu_Dou_No.1 Glycine max-Yu_Dou_No.22 Glycine max-Zhang_Chun_Man_Cang_Jin Glycine max-Zhutwinning2 Glycine max-Zi_Hua_No.4 Glycine soja-PI_549046 Glycine soja-PI_562565 Glycine soja-PI_578357 Gossypium arboreum Gossypium barbadense Gossypium hirsutum Helianthus annuus Hevea brasiliensis Hibiscus syriacus Hordeum vulgare Humulus lupulus Ipomoea batatas Jatropha curcas Juglans regia Lactuca sativa Lagenaria siceraria Lotus japonicus Malus domestica Manihot esculenta Medicago truncatula Moringa oleifera Musa acuminata Nelumbo nucifera Nicotiana attenuata Nicotiana benthamiana Nicotiana tabacum Olea europaea Oryza glaberrima Oryza nivara Oryza rufipogon Oryza sativa Oryza sativa ssp. Indica Panax notoginseng Panicum hallii Panicum virgatum Persea americana Phalaenopsis aphrodite Phaseolus vulgaris Phoenix dactylifera Physcomitrella patens Picea abies Pisum sativum Pogostemon cablin Populus euphratica Populus trichocarpa Prunus avium Prunus dulcis Prunus persica Punica granatum Quercus robur Raphanus sativus Ricinus communis Saccharum hybrid cultivar Salvia miltiorrhiza Salvinia cucullata Selaginella moellendorffii Setaria italica Silene latifolia Solanum habrochaites Solanum lycopersicum Solanum melongena Solanum pennellii Solanum pimpinellifolium Solanum tuberosum Sorghum bicolor Spinacia oleracea Spirodela polyrhiza Tarenaya hassleriana Theobroma cacao Triticum aestivum Vaccinium corymbosum Vigna radiata Vigna unguiculata Vitis vinifera Volvox carteri Zea mays Ziziphus jujuba Zostera marina
• Inter-miRNA distance

By expression

• Species Choose 25 lycophytes and ferns from Xuemei Chen's data Actinidia chinensis Amborella trichopoda Arabidopsis halleri Arabidopsis lyrata Arabidopsis thaliana Arachis duranensis Arachis ipaensis Arachis monticola Asparagus officinalis Brachypodium distachyon Brassica juncea Brassica napus Brassica nigra Brassica oleracea Brassica rapa Cajanus cajan Camelina sativa Camellia sinensis Capsella rubella Capsicum annuum Carica papaya Carthamus tinctorius Catharanthus roseus Cenchrus americanus Chenopodium quinoa Chlamydomonas reinhardtii Cicer arietinum Cicer reticulatum Citrullus lanatus Citrus clementina Citrus maxima Citrus reticulata Citrus sinensis Cocos nucifera Coffea arabica Coffea canephora Cucumis melo Cucumis sativus Cucurbita maxima Cucurbita moschata Cuscuta campestris Daucus carota Eleusine coracana Eragrostis tef Erythranthe guttata Eucalyptus grandis Eutrema salsugineum Fagus sylvatica Fragaria ananassa Fragaria vesca Fraxinus excelsior Ginkgo biloba Glycine max Glycine max-58-161 Glycine max-Amsoy Glycine max-Dong_Nong_No.50 Glycine max-Feng_Di_Huang Glycine max-Han_Dou_No.5 Glycine max-Hei_He_No.43 Glycine max-Jin_Dou_No.23 Glycine max-Ji_Dou_No.17 Glycine max-Ju_Xuan_No.23 Glycine max-Ke_Shan_No.1 Glycine max-PI_398296 Glycine max-PI_548362 Glycine max-Qi_Huang_No.34 Glycine max-Shi_Sheng_Chang_Ye Glycine max-Tie_Feng_No.18 Glycine max-Tie_Jia_Si_Li_Huang Glycine max-Tong_Shan_Tian_E_Dan Glycine max-Wan_Dou_No.28 Glycine max-Xu_Dou_No.1 Glycine max-Yu_Dou_No.22 Glycine max-Zhang_Chun_Man_Cang_Jin Glycine max-Zhutwinning2 Glycine max-Zi_Hua_No.4 Glycine soja-PI_549046 Glycine soja-PI_562565 Glycine soja-PI_578357 Gossypium arboreum Gossypium barbadense Gossypium hirsutum Helianthus annuus Hevea brasiliensis Hibiscus syriacus Hordeum vulgare Humulus lupulus Ipomoea batatas Jatropha curcas Juglans regia Lactuca sativa Lagenaria siceraria Lotus japonicus Malus domestica Manihot esculenta Medicago truncatula Moringa oleifera Musa acuminata Nelumbo nucifera Nicotiana attenuata Nicotiana benthamiana Nicotiana tabacum Olea europaea Oryza glaberrima Oryza nivara Oryza rufipogon Oryza sativa Oryza sativa ssp. Indica Panax notoginseng Panicum hallii Panicum virgatum Persea americana Phalaenopsis aphrodite Phaseolus vulgaris Phoenix dactylifera Physcomitrella patens Picea abies Pisum sativum Pogostemon cablin Populus euphratica Populus trichocarpa Prunus avium Prunus dulcis Prunus persica Punica granatum Quercus robur Raphanus sativus Ricinus communis Saccharum hybrid cultivar Salvia miltiorrhiza Salvinia cucullata Selaginella moellendorffii Setaria italica Silene latifolia Solanum habrochaites Solanum lycopersicum Solanum melongena Solanum pennellii Solanum pimpinellifolium Solanum tuberosum Sorghum bicolor Spinacia oleracea Spirodela polyrhiza Tarenaya hassleriana Theobroma cacao Triticum aestivum Vaccinium corymbosum Vigna radiata Vigna unguiculata Vitis vinifera Volvox carteri Zea mays Ziziphus jujuba Zostera marina
• Tissue Choose

By syntenic blocks

• Species Choose 25 lycophytes and ferns from Xuemei Chen's data Actinidia chinensis Amborella trichopoda Arabidopsis halleri Arabidopsis lyrata Arabidopsis thaliana Arachis duranensis Arachis ipaensis Arachis monticola Asparagus officinalis Brachypodium distachyon Brassica juncea Brassica napus Brassica nigra Brassica oleracea Brassica rapa Cajanus cajan Camelina sativa Camellia sinensis Capsella rubella Capsicum annuum Carica papaya Carthamus tinctorius Catharanthus roseus Cenchrus americanus Chenopodium quinoa Chlamydomonas reinhardtii Cicer arietinum Cicer reticulatum Citrullus lanatus Citrus clementina Citrus maxima Citrus reticulata Citrus sinensis Cocos nucifera Coffea arabica Coffea canephora Cucumis melo Cucumis sativus Cucurbita maxima Cucurbita moschata Cuscuta campestris Daucus carota Eleusine coracana Eragrostis tef Erythranthe guttata Eucalyptus grandis Eutrema salsugineum Fagus sylvatica Fragaria ananassa Fragaria vesca Fraxinus excelsior Ginkgo biloba Glycine max Glycine max-58-161 Glycine max-Amsoy Glycine max-Dong_Nong_No.50 Glycine max-Feng_Di_Huang Glycine max-Han_Dou_No.5 Glycine max-Hei_He_No.43 Glycine max-Jin_Dou_No.23 Glycine max-Ji_Dou_No.17 Glycine max-Ju_Xuan_No.23 Glycine max-Ke_Shan_No.1 Glycine max-PI_398296 Glycine max-PI_548362 Glycine max-Qi_Huang_No.34 Glycine max-Shi_Sheng_Chang_Ye Glycine max-Tie_Feng_No.18 Glycine max-Tie_Jia_Si_Li_Huang Glycine max-Tong_Shan_Tian_E_Dan Glycine max-Wan_Dou_No.28 Glycine max-Xu_Dou_No.1 Glycine max-Yu_Dou_No.22 Glycine max-Zhang_Chun_Man_Cang_Jin Glycine max-Zhutwinning2 Glycine max-Zi_Hua_No.4 Glycine soja-PI_549046 Glycine soja-PI_562565 Glycine soja-PI_578357 Gossypium arboreum Gossypium barbadense Gossypium hirsutum Helianthus annuus Hevea brasiliensis Hibiscus syriacus Hordeum vulgare Humulus lupulus Ipomoea batatas Jatropha curcas Juglans regia Lactuca sativa Lagenaria siceraria Lotus japonicus Malus domestica Manihot esculenta Medicago truncatula Moringa oleifera Musa acuminata Nelumbo nucifera Nicotiana attenuata Nicotiana benthamiana Nicotiana tabacum Olea europaea Oryza glaberrima Oryza nivara Oryza rufipogon Oryza sativa Oryza sativa ssp. Indica Panax notoginseng Panicum hallii Panicum virgatum Persea americana Phalaenopsis aphrodite Phaseolus vulgaris Phoenix dactylifera Physcomitrella patens Picea abies Pisum sativum Pogostemon cablin Populus euphratica Populus trichocarpa Prunus avium Prunus dulcis Prunus persica Punica granatum Quercus robur Raphanus sativus Ricinus communis Saccharum hybrid cultivar Salvia miltiorrhiza Salvinia cucullata Selaginella moellendorffii Setaria italica Silene latifolia Solanum habrochaites Solanum lycopersicum Solanum melongena Solanum pennellii Solanum pimpinellifolium Solanum tuberosum Sorghum bicolor Spinacia oleracea Spirodela polyrhiza Tarenaya hassleriana Theobroma cacao Triticum aestivum Vaccinium corymbosum Vigna radiata Vigna unguiculata Vitis vinifera Volvox carteri Zea mays Ziziphus jujuba Zostera marina
• Block ID

• Species Choose 25 lycophytes and ferns from Xuemei Chen's data Actinidia chinensis Amborella trichopoda Arabidopsis halleri Arabidopsis lyrata Arabidopsis thaliana Arachis duranensis Arachis ipaensis Arachis monticola Asparagus officinalis Brachypodium distachyon Brassica juncea Brassica napus Brassica nigra Brassica oleracea Brassica rapa Cajanus cajan Camelina sativa Camellia sinensis Capsella rubella Capsicum annuum Carica papaya Carthamus tinctorius Catharanthus roseus Cenchrus americanus Chenopodium quinoa Chlamydomonas reinhardtii Cicer arietinum Cicer reticulatum Citrullus lanatus Citrus clementina Citrus maxima Citrus reticulata Citrus sinensis Cocos nucifera Coffea arabica Coffea canephora Cucumis melo Cucumis sativus Cucurbita maxima Cucurbita moschata Cuscuta campestris Daucus carota Eleusine coracana Eragrostis tef Erythranthe guttata Eucalyptus grandis Eutrema salsugineum Fagus sylvatica Fragaria ananassa Fragaria vesca Fraxinus excelsior Ginkgo biloba Glycine max Glycine max-58-161 Glycine max-Amsoy Glycine max-Dong_Nong_No.50 Glycine max-Feng_Di_Huang Glycine max-Han_Dou_No.5 Glycine max-Hei_He_No.43 Glycine max-Jin_Dou_No.23 Glycine max-Ji_Dou_No.17 Glycine max-Ju_Xuan_No.23 Glycine max-Ke_Shan_No.1 Glycine max-PI_398296 Glycine max-PI_548362 Glycine max-Qi_Huang_No.34 Glycine max-Shi_Sheng_Chang_Ye Glycine max-Tie_Feng_No.18 Glycine max-Tie_Jia_Si_Li_Huang Glycine max-Tong_Shan_Tian_E_Dan Glycine max-Wan_Dou_No.28 Glycine max-Xu_Dou_No.1 Glycine max-Yu_Dou_No.22 Glycine max-Zhang_Chun_Man_Cang_Jin Glycine max-Zhutwinning2 Glycine max-Zi_Hua_No.4 Glycine soja-PI_549046 Glycine soja-PI_562565 Glycine soja-PI_578357 Gossypium arboreum Gossypium barbadense Gossypium hirsutum Helianthus annuus Hevea brasiliensis Hibiscus syriacus Hordeum vulgare Humulus lupulus Ipomoea batatas Jatropha curcas Juglans regia Lactuca sativa Lagenaria siceraria Lotus japonicus Malus domestica Manihot esculenta Medicago truncatula Moringa oleifera Musa acuminata Nelumbo nucifera Nicotiana attenuata Nicotiana benthamiana Nicotiana tabacum Olea europaea Oryza glaberrima Oryza nivara Oryza rufipogon Oryza sativa Oryza sativa ssp. Indica Panax notoginseng Panicum hallii Panicum virgatum Persea americana Phalaenopsis aphrodite Phaseolus vulgaris Phoenix dactylifera Physcomitrella patens Picea abies Pisum sativum Pogostemon cablin Populus euphratica Populus trichocarpa Prunus avium Prunus dulcis Prunus persica Punica granatum Quercus robur Raphanus sativus Ricinus communis Saccharum hybrid cultivar Salvia miltiorrhiza Salvinia cucullata Selaginella moellendorffii Setaria italica Silene latifolia Solanum habrochaites Solanum lycopersicum Solanum melongena Solanum pennellii Solanum pimpinellifolium Solanum tuberosum Sorghum bicolor Spinacia oleracea Spirodela polyrhiza Tarenaya hassleriana Theobroma cacao Triticum aestivum Vaccinium corymbosum Vigna radiata Vigna unguiculata Vitis vinifera Volvox carteri Zea mays Ziziphus jujuba Zostera marina
• miRNA ID