Lsa-MIR171e

Basic info.

• miRNA locus ID
• Lsa-MIR171e

• miRNA locus accession
• PmiREN000000064

• Organism
• Lactuca sativa

• Genomic location
• Lsat_1_v8_lg_8  5912936  5913059  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  AAAACA        AA    CA     C    G      C  TC   - G      CCTGGT
        AAGAAACA  GAGG  TGATA TGGT TGGCTC TG  CTC T TCCTGT      
        ||||||||  ||||  ||||| |||| |||||| ||  ||| | ||||||       
        TTCTTTGT  CTTC  ACTAT ACCA GCCGAG AC  GAG A AGGGTA      
GTTTACGT        AC    AC     A    A      T  -C   T G      ATGTTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference