PmiREN: Plant microRNA Encyclopedia

Atr-MIR171a

Basic info.

miRNA locus ID
Atr-MIR171a

miRNA locus accession
PmiREN000214

Organism
Amborella trichopoda

Genomic location
Atr-AmTr_v1.0_scaffold00001 2643237 2643352 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  ATTGAAGGAGTTAT   C        A -             AA    T      AAA
                TTG GATGTTGG C CGGTTCAATCAGA  ACAC GCCCAG   
                ||| |||||||| | |||||||||||||  |||| ||||||    
                GAC CTATAACC G GCCGAGTTAGTTT  TGTG TGGGTC   
CTGTTCTACTCTTCGA   C        - C             CG    C      GTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00044.249	0.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Atr-MIR171a

>